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Create custom image visualization and analysis tools with napari
napari installation
Downloading and launching this workshop’s Jupyter notebooks
Alternative: Open the notebooks and run napari in the cloud using SciPy 2025 Nebari instance
The napari application
napari Plugins
From workflow to widget: customizing napari
Mouse Callbacks & Layer Events
Creating a napari plugin
Notebooks
Bioimage visualization in Python
Manual annotation
notebook: interactive analysis
Exploratory analysis: spot detection
Index